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Hunt, Gene (2006): Fitting and comparing models of phyletic evolution; random walks and beyond
Leg/Site/Hole:
Related Expeditions:
DSDP 43
DSDP 74
DSDP 43 384
DSDP 74 525
Identifier:
ID:
2007-006234
Type:
georefid
ID:
10.1666/05070.1
Type:
doi
Creator:
Name:
Hunt, Gene
Affiliation:
Smithsonian Institution National Museum of Natural History, Department of Paleobiology, Washington, DC, United States
Role:
author
Identification:
Title:
Fitting and comparing models of phyletic evolution; random walks and beyond
Year:
2006
Source:
Paleobiology
Publisher:
Paleontological Society, Lawrence, KS, United States
Volume:
32
Issue:
4
Pages:
578-601
Abstract:
For almost 30 years, paleontologists have analyzed evolutionary sequences in terms of simple null models, most commonly random walks. Despite this long history, there has been little discussion of how model parameters may be estimated from real paleontological data. In this paper, I outline a likelihood-based framework for fitting and comparing models of phyletic evolution. Because of its usefulness and historical importance, I focus on a general form of the random walk model. The long-term dynamics of this model depend on just two parameters: the mean (mu (sub step) ) and variance (sigma (super 2) (sub step) ) of the distribution of evolutionary transitions (or "steps"). The value of mu (sub step) determines the directionality of a sequence, and sigma (super 2) (sub step) governs its volatility. Simulations show that these two parameters can be inferred reliably from paleontological data regardless of how completely the evolving lineage is sampled. In addition to random walk models, suitable modification of the likelihood function permits consideration of a wide range of alternative evolutionary models. Candidate evolutionary models may be compared on equal footing using information statistics such as the Akaike Information Criterion (AIC). Two extensions to this method are developed: modeling stasis as an evolutionary mode, and assessing the homogeneity of dynamics across multiple evolutionary sequences. Within this framework, I reanalyze two well-known published data sets: tooth measurements from the Eocene mammal Cantius, and shell shape in the planktonic foraminifera Contusotruncana: These analyses support previous interpretations about evolutionary mode in size and shape variables in Cantius, and confirm the significantly directional nature of shell shape evolution in Contusotruncana: In addition, this model-fitting approach leads to a further insight about the geographic structure of evolutionary change in this foraminiferan lineage.
Language:
English
Genre:
Serial
Rights:
URL:
Coverage:
Geographic coordinates:
North:40.2139
West:-51.3948
East: 2.5908
South:-29.0415
Keywords:
General paleontology; Atlantic Ocean; biologic evolution; Cantius; Cenozoic; Chordata; Contusotruncana; Deep Sea Drilling Project; DSDP Site 384; DSDP Site 525; Eocene; Eutheria; Foraminifera; Invertebrata; IPOD; Leg 43; Leg 74; Mammalia; mathematical models; microfossils; morphology; Paleogene; Primates; Protista; random walks; shells; statistical analysis; stochastic processes; teeth; Tertiary; Tetrapoda; Theria; Vertebrata;
.
Copyright © 2006-2007 IODP-MI